Recently published apps
ENCODE ChIP-Seq Pipeline 2 analysis studies chromatin modifications and binding patterns of transcription factors and other proteins. It combines chromatin immunoprecipitation (ChIP) assays with standard NGS sequencing. The workflow is based on ChIP-Seq 2 pipeline, developed by the ENCODE Consortium.
ENCODE ATAC-seq Pipeline performs quality control and signal processing, producing alignments and measures of enrichment. The Assay for Transposase-Accessible Chromatin followed by sequencing (ATAC-seq) experiment provides genome-wide profiles of chromatin accessibility. Briefly, the ATAC-seq method works as follows: loaded transposase inserts sequencing primers into open chromatin sites across the genome, and reads are then sequenced. The ends of the reads mark open chromatin sites. The workflow is based on the ENCODE ATAC-seq pipeline, developed by the ENCODE Consortium.