Recently Published Apps (US only)
- scRNAseq Nextflow Workflow: An automated pipeline for processing single-cell RNA-seq data, handling steps like quality control, alignment or quantification, doublet detection, normalization, clustering, and trajectory analysis. It ensures reproducibility, scalability, and compatibility with tools like Cell Ranger, STARsolo, or Alevin, making it suitable for large-scale single-cell studies.
- rnavar Nextflow Workflow: It is a pipeline for variant calling from RNA-seq data, following GATK Best Practices. It performs quality control, alignment, duplicate marking, split-read handling, base recalibration, and variant calling using tools like STAR and GATK HaplotypeCaller. It also supports variant annotation and generates comprehensive reports, enabling accurate detection of SNPs and indels from RNA-seq experiments.
