Recently published apps

We have just published the following GATK 4.4.0.0 tools:

• GATK IndexFeatureFile used for indexing of provided feature files.
• GATK MergeVcfs – used for combining multiple variant files.
• GATK VariantEval BETA – used for evaluating variant calls.
• GATK FilterMutectCalls – used to filter somatic SNVs and indels called by Mutect2.

We have also published Minimac 4 4.1.2, which is a tool for imputing genotypes.

Marko Marinkovic